PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco014053.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family SRS
Protein Properties Length: 201aa    MW: 19791 Da    PI: 6.661
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco014053.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70290.92.7e-285213969154
       DUF702  69 eaaskrkrelkskkqsalsstk.lssaes.kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                   ++skr rel +++ +a+ +++ ++ a+s    + + s+P+evss+avfrc+rvs +d++++e+aYqtav+igGhvfkGiLyd+G+++
  Aco014053.1  52 VDSSKRARELCAARPTAIVTATaTALASSgGGGTVAGSFPSEVSSAAVFRCIRVSPMDEADDEFAYQTAVNIGGHVFKGILYDHGPDS 139
                  56788888886665555544330333333134566778************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.6E-2649138IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016241.5E-2490137IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
LSLGTPSTRH AGAGPGFGGP GPAQPPSSLQ WDVMGRPNKQ QCCGGGGGSG GVDSSKRARE  60
LCAARPTAIV TATATALASS GGGGTVAGSF PSEVSSAAVF RCIRVSPMDE ADDEFAYQTA  120
VNIGGHVFKG ILYDHGPDSH QYGGEPSSSP AAANAAAALA MSSSAAAMAS AGLLDPSAVY  180
PAPISAFMAG TQFFPQHPRP *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010918973.11e-51PREDICTED: protein SHI RELATED SEQUENCE 1
TrEMBLM0SPV93e-47M0SPV9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P17960_0019e-47(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.13e-24SHI-related sequence 5